![]() ![]() Checking whether C compiler has -isysroot Check for working CXX compiler: /opt/local/bin/c++ - works Check for working CXX compiler: /opt/local/bin/c++ Checking whether CXX compiler supports OSX deployment target flag - Checking whether CXX compiler supports OSX deployment target flag - yes Checking whether CXX compiler has -isysroot - yes Checking whether CXX compiler has -isysroot ![]() The C compiler identification is GNU 4.9.2 The CXX compiler identification is GNU 4.9.2 Performing configure step for 'gtest160' Then I deleted my previous breakdancer folder and re-started all the installation from scratch, but it fails again at the same point (STEP=scanning dependencies of target breakdancer): $make I installed gcc49 via MacPorts, and set it as the active compiler. Make: *** Error 2ĭoes anyone have a suggestion to solve this out ? Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/./include/c++/v1/iosfwd:188:33: note:Ĭlass _LIBCPP_TYPE_VIS_ONLY basic_string Std::_1::allocator >, 11>' requested here Users/lab/TOOLS_VariantAnalysis/breakdancer/src/lib/common/ReadFlags.hpp:41:37: note: T elems // fixed-size array of elements of type T Implicit instantiation of undefined template 'std::_1::basic_string, std::_1::allocator >' Users/lab/TOOLS_VariantAnalysis/breakdancer/build/vendor/boost/boost/include/boost/array.hpp:62:11: error: In file included from /Users/lab/TOOLS_VariantAnalysis/breakdancer/src/lib/common/ReadFlags.hpp:5: In file included from /Users/lab/TOOLS_VariantAnalysis/breakdancer/src/lib/io/Alignment.hpp:3: In file included from /Users/lab/TOOLS_VariantAnalysis/breakdancer/src/lib/breakdancer/BasicRegion.hpp:3: In file included from /Users/lab/TOOLS_VariantAnalysis/breakdancer/src/lib/breakdancer/BreakDancer.hpp:3: In file included from /Users/lab/TOOLS_VariantAnalysis/breakdancer/src/lib/breakdancer/BreakDancer.cpp:1: Building CXX object build/src/lib/breakdancer/CMakeFiles/breakdancer.dir/ Scanning dependencies of target breakdancer Performing download step (verify and extract) for 'boost-libs' Scanning dependencies of target boost-libs DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=/usr/local) ![]() I started Breakdancer compilation as recommended: I installed cmake (3.2.3) as required, with the command line option activated (symlink in my usr/bin/ folder) ![]()
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